Our Image Analysis Unit provides access to a wide variety of image and time-lapse analysis and visualization tools running on high processing power computers. We tailor specific data and image processing solutions, using various traditional and novel image processing tools in commercial and free analysis software as Imaris, Image pro premier, ImageJ, Matlab, and Python. These solutions include image enhancement, segmentation, 3D model reconstruction, alignment, super resolution (e.g., SRRF), unsupervised (e.g., KNN, GMM), and supervised (e.g., machine and deep learning) analysis.
| Imaging software | Publisher | Type | Description | Reservation/ Support | |
|---|---|---|---|---|---|
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Imaris | Bitplane | Commercial | 3D rendering and quantitative segmentation, analysis, tracking, interactions for fluorescence images | Computer IMARIS software |
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ImageJ/FIJI | NIH | Free | Image analysis and processing with extensive plug-ins and macros | Contact us |
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Zen 2.3 | Zeiss | Commercial (full) | Offline full version for 3D reconstruction, 2D colocalization and LSM880 Airyscan processing | Computer IMARIS software |
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Zen 2.6 | Zeiss | Commercial (full) | Offline full version for 3D reconstruction, 2D colocalization, LSM880 Airyscan processing and widefield and confocal deconvolution | Computer IMARIS software |
| MRI tool | BCF | Matlab based custom homemade tool | 3D reconstruction and display, volume & intensity measurements, synchronization & comparison, T1, T2, T2* mapping, filtering, co-registration, automatic segmentation | Contact us | |
| Custom macros and batch solutions | Contact us | ||||
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Image Pro Plus | Media Cybernetics | Commercial | Segmentation, classification, count, measurements for brightfield and 2D fluorescence images | Computer analysis 4 |
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Matlab | MathWorks | Commercial | Numerical computing environment for data analysis and visualization | Contact us |
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Python | Python | Commercial | Scripting and automation language for system integration | Contact us |
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Adobe Photoshop | Adobe | Commercial | Image, line art and graph juxtaposition for visualization and preparation for publication | Contact us |
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Autoaligner | Bitplane | Commercial | Preprocessing for layer alignment of serial sections in same or different formats | Contact us |
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Living Image | Xenogen/ Perkin Elmer | Commercial | Offline 2D fluorescence and bioluminescence quantitative data measurements | Computer in vivo analysis |
Instructions for specific applications
New users
Please contact Ariel Shemesh tel. +972-77-887-1109, to coordinate a meeting.
